Nishimura Y, Omae K, Tominaga K, Iwasaki W
"CORGIAS: identifying correlated gene pairs by considering evolutionary history in a large-scale prokaryotic genome dataset"
NAR Genom. Bioinform. 7, lqaf182 (2025).

Amikura K, Ishii S, Shimizu Y, Suzuki S
"Evolutionary Flexibility of Ribosome Biogenesis in Bacteria"
Mol. Biol. Evol. 42, msaf288 (2025).

Zhao Z, Omae K, Iwasaki W, Zhang Z, Pan F, Lee EJ, Ito K, Hattori M
"Bioinformatics classification of the MgtE Mg²⁺ channel and de novo protein design for the stabilization of its novel subclass"
Acta Biochim. Biophys. Sin. (2025).

Chan LI, Omae K, Brown CR, Amikura KI, Ekemezie CL, Clark J, Nishide K, Helena-Bueno K, Palmowski P, Porter A, Suzuki S, Melnikov SV
"The evolutionary lifecycle of ribosome hibernation factors"
bioRxiv (2025).

Tahara R, Hatakeda K, Nishimura M, Yogata K, Fukai R, Miyazaki A, Yada T, Enokido Y, Abe M, Kawasaki S, Sakurai R, Okada T, Pilorget C, Bibring J, Hamm V, Lourit L, Loizeau D, Riu L, Yumoto K, Cho Y, Sugita S, Nakahara S, Mori S, Aikyo Y, Kameda S, Stabbins R, Shimizu Y, Miyamoto H, Hitomi Y, Nakano A, Nagashima K, Sugahara H, Suzuki S, Kimura S, Usui T
"JAXA Curation for Bennu Samples Returned by the NASA ’s OSIRIS ‐ REx Mission"
Meteorit Planet Sci. (2025).

Konno N, Miyake K, Nishino S, Omae K, Yanagisawa H, Tsuru S, Nishimura Y, Kikkawa M, Furusawa C, Iwasaki W
"Repeatability of Protein Structural Evolution Following Convergent Gene Fusions"
Nat Commun. 16, 8278 (2025).

Nakagawa Y, Amikura K, Omae K, Suzuki S
"A Novel Insertion Site for Group I Introns in tRNA Genes of Patescibacteria"
bioRxiv (2025).

Amikura K, Ishii S, Shimizu Y, Suzuki S
"Evolutionary Flexibility of Ribosome Biogenesis in Bacteria"
bioRxiv (2024).